dodiscover.EquivalenceClass#
- class dodiscover.EquivalenceClass(*args, **kwargs)[source]#
Protocol for equivalence class of graphs.
- Attributes:
bidirected_edge_name
Name of the bidirected edges.
circle_edge_name
Name of the circle edge endpoints.
directed_edge_name
Name of the directed edges.
excluded_triples
A set of triples that are excluded from orientation.
nodes
Return an iterable over nodes in graph.
undirected_edge_name
Name of the undirected edges.
Methods
add_edge
(u, v[, edge_type])Add an edge to the graph.
add_node
(node_for_adding, **attr)Add a node to the graph.
copy
()Create a copy of the graph.
edges
([data])Return an iterable over edge tuples in graph.
has_edge
(u, v[, edge_type])Check if graph has an edge for a specific edge type.
mark_unfaithful_triple
(v_i, u, v_j)Mark a triple as unfaithful, and put it in the excluded triple set.
neighbors
(node)Iterate over all nodes that have any edge connection with 'node'.
orient_uncertain_edge
(u, v)Orients an uncertain edge in the equivalence class to directed
'u'*->'v'
.predecessors
(node)Nodes with directed edges pointing to 'node'.
remove_edge
(u, v[, edge_type])Remove an edge from the graph.
remove_edges_from
(edges)Remove a set of edges from the graph.
remove_node
(u)Remove a node from the graph.
subgraph
(nodes)Get subgraph based on nodes.
successors
(node)Nodes with directed edges pointing from 'node'.
Convert a graph to a fully undirected networkx graph.
- add_edge(u, v, edge_type='all')#
Add an edge to the graph.
- add_node(node_for_adding, **attr)#
Add a node to the graph.
- property bidirected_edge_name#
Name of the bidirected edges.
- property circle_edge_name#
Name of the circle edge endpoints.
- copy()#
Create a copy of the graph.
- property directed_edge_name#
Name of the directed edges.
- edges(data=None)#
Return an iterable over edge tuples in graph.
- property excluded_triples#
A set of triples that are excluded from orientation.
- has_edge(u, v, edge_type='any')#
Check if graph has an edge for a specific edge type.
- mark_unfaithful_triple(v_i, u, v_j)[source]#
Mark a triple as unfaithful, and put it in the excluded triple set.
- neighbors(node)#
Iterate over all nodes that have any edge connection with ‘node’.
- property nodes#
Return an iterable over nodes in graph.
- orient_uncertain_edge(u, v)[source]#
Orients an uncertain edge in the equivalence class to directed
'u'*->'v'
.
- remove_edge(u, v, edge_type='all')#
Remove an edge from the graph.
- remove_edges_from(edges)#
Remove a set of edges from the graph.
- remove_node(u)#
Remove a node from the graph.
- subgraph(nodes)#
Get subgraph based on nodes.
- to_undirected()#
Convert a graph to a fully undirected networkx graph.
All nodes are connected by an undirected edge if there are any edges between the two.
- property undirected_edge_name#
Name of the undirected edges.